gofmt100%

Gofmt formats Go programs. We run gofmt -s on your code, where -s is for the "simplify" command

No problems detected. Good job!

go_vet100%

go vet examines Go source code and reports suspicious constructs, such as Printf calls whose arguments do not align with the format string.

No problems detected. Good job!

gocyclo71%

Gocyclo calculates cyclomatic complexities of functions in Go source code. The cyclomatic complexity of a function is calculated according to the following rules: 1 is the base complexity of a function +1 for each 'if', 'for', 'case', '&&' or '||' Go Report Card warns on functions with cyclomatic complexity > 15.

• philosopher/lib/ext/ptmprophet/ptmprophet.go
  • Line 135: warning: cyclomatic complexity 23 of function (PTMProphet).appendParams() is high (> 15) (gocyclo)

• philosopher/lib/fil/fdr.go
  • Line 223: warning: cyclomatic complexity 44 of function RazorFilter() is high (> 15) (gocyclo)
  • Line 453: warning: cyclomatic complexity 32 of function ProtXMLFilter() is high (> 15) (gocyclo)
  • Line 28: warning: cyclomatic complexity 22 of function PepXMLFDRFilter() is high (> 15) (gocyclo)

• philosopher/lib/qua/lfq.go
  • Line 188: warning: cyclomatic complexity 25 of function calculateIntensities() is high (> 15) (gocyclo)
  • Line 36: warning: cyclomatic complexity 19 of function peakIntensity() is high (> 15) (gocyclo)

• philosopher/lib/rep/mzid.go
  • Line 15: warning: cyclomatic complexity 23 of function (Evidence).MzIdentMLReport() is high (> 15) (gocyclo)

• philosopher/lib/aba/pep.go
  • Line 161: warning: cyclomatic complexity 18 of function SummarizeAttributes() is high (> 15) (gocyclo)

• philosopher/lib/fin/fin.go
  • Line 565: warning: cyclomatic complexity 16 of function ScanEventData() is high (> 15) (gocyclo)

• philosopher/lib/qua/iso.go
  • Line 143: warning: cyclomatic complexity 55 of function prepareLabelStructureWithMS2() is high (> 15) (gocyclo)
  • Line 279: warning: cyclomatic complexity 55 of function prepareLabelStructureWithMS3() is high (> 15) (gocyclo)
  • Line 21: warning: cyclomatic complexity 22 of function calculateIonPurity() is high (> 15) (gocyclo)

• philosopher/lib/rep/ion.go
  • Line 112: warning: cyclomatic complexity 34 of function (Evidence).MetaIonReport() is high (> 15) (gocyclo)

• philosopher/lib/ext/proteinprophet/proteinprophet.go
  • Line 165: warning: cyclomatic complexity 28 of function (ProteinProphet).appendParams() is high (> 15) (gocyclo)

• philosopher/lib/bio/aa.go
  • Line 22: warning: cyclomatic complexity 22 of function New() is high (> 15) (gocyclo)

• philosopher/lib/aba/pro.go
  • Line 310: warning: cyclomatic complexity 18 of function saveProteinAbacusResult() is high (> 15) (gocyclo)

• philosopher/lib/sys/sys_test.go
  • Line 10: warning: cyclomatic complexity 19 of function TestSysMeta() is high (> 15) (gocyclo)

• philosopher/lib/rep/parameters.go
  • Line 8: warning: cyclomatic complexity 78 of function (*Evidence).AssembleSearchParameters() is high (> 15) (gocyclo)

• philosopher/lib/rep/psm.go
  • Line 121: warning: cyclomatic complexity 38 of function (Evidence).MetaPSMReport() is high (> 15) (gocyclo)

• philosopher/lib/rep/peptide.go
  • Line 135: warning: cyclomatic complexity 35 of function (Evidence).MetaPeptideReport() is high (> 15) (gocyclo)
  • Line 21: warning: cyclomatic complexity 19 of function (*Evidence).AssemblePeptideReport() is high (> 15) (gocyclo)

• philosopher/lib/ext/peptideprophet/peptideprophet.go
  • Line 323: warning: cyclomatic complexity 40 of function peptideProphet() is high (> 15) (gocyclo)
  • Line 142: warning: cyclomatic complexity 16 of function interactParser() is high (> 15) (gocyclo)

• philosopher/lib/inf/inf.go
  • Line 29: warning: cyclomatic complexity 31 of function ProteinInference() is high (> 15) (gocyclo)

• philosopher/lib/qua/bqt.go
  • Line 177: warning: cyclomatic complexity 18 of function mapProtXML2Clusters() is high (> 15) (gocyclo)

• philosopher/lib/rep/msstats.go
  • Line 17: warning: cyclomatic complexity 19 of function (Evidence).MetaMSstatsReport() is high (> 15) (gocyclo)

• philosopher/lib/fil/fil_test.go
  • Line 12: warning: cyclomatic complexity 31 of function Test_readPepXMLInput() is high (> 15) (gocyclo)

• philosopher/lib/mzn/mzn.go
  • Line 112: warning: cyclomatic complexity 38 of function processSpectrum() is high (> 15) (gocyclo)

• philosopher/lib/obo/obo.go
  • Line 94: warning: cyclomatic complexity 40 of function (*Onto).Parse() is high (> 15) (gocyclo)

• philosopher/lib/bio/bio_test.go
  • Line 9: warning: cyclomatic complexity 21 of function TestAminoAcids() is high (> 15) (gocyclo)

• philosopher/lib/qua/qua.go
  • Line 248: warning: cyclomatic complexity 35 of function assignLabelNames() is high (> 15) (gocyclo)
  • Line 434: warning: cyclomatic complexity 23 of function classification() is high (> 15) (gocyclo)

• philosopher/lib/rep/protein.go
  • Line 21: warning: cyclomatic complexity 39 of function (*Evidence).AssembleProteinReport() is high (> 15) (gocyclo)
  • Line 235: warning: cyclomatic complexity 35 of function (Evidence).MetaProteinReport() is high (> 15) (gocyclo)

• philosopher/lib/rep/updater.go
  • Line 338: warning: cyclomatic complexity 20 of function (*Evidence).UpdateSupportingSpectra() is high (> 15) (gocyclo)
  • Line 54: warning: cyclomatic complexity 20 of function (*Evidence).UpdateIonStatus() is high (> 15) (gocyclo)

• philosopher/lib/dat/db.go
  • Line 200: warning: cyclomatic complexity 26 of function ProcessUniProtKB() is high (> 15) (gocyclo)

• philosopher/lib/id/pep.go
  • Line 338: warning: cyclomatic complexity 20 of function processSpectrumQuery() is high (> 15) (gocyclo)

• philosopher/lib/spc/spc_test.go
  • Line 88: warning: cyclomatic complexity 20 of function TestPepXML_Parse() is high (> 15) (gocyclo)

• philosopher/lib/mzn/mzn_test.go
  • Line 53: warning: cyclomatic complexity 16 of function TestMS2Spectra() is high (> 15) (gocyclo)

• philosopher/lib/fil/fil.go
  • Line 505: warning: cyclomatic complexity 21 of function processProteinInferenceIdentifications() is high (> 15) (gocyclo)
  • Line 27: warning: cyclomatic complexity 19 of function Run() is high (> 15) (gocyclo)
  • Line 258: warning: cyclomatic complexity 16 of function ptmBasedPSMFiltering() is high (> 15) (gocyclo)

• philosopher/lib/rep/modification.go
  • Line 18: warning: cyclomatic complexity 33 of function (*Evidence).MapMods() is high (> 15) (gocyclo)
  • Line 162: warning: cyclomatic complexity 20 of function (*Evidence).AssembleModificationReport() is high (> 15) (gocyclo)

golint100%

Golint is a linter for Go source code.

No problems detected. Good job!

license100%

Checks whether your project has a LICENSE file.

No problems detected. Good job!

ineffassign99%

IneffAssign detects ineffectual assignments in Go code.

• philosopher/lib/id/pep.go
  • Line 254: warning: ineffectual assignment to fileCheckList (ineffassign)

misspell99%

Misspell Finds commonly misspelled English words

• philosopher/lib/fil/fil.go
  • Line 301: warning: "teh" is a misspelling of "the" (misspell)