gofmt91%

Gofmt formats Go programs. We run gofmt -s on your code, where -s is for the "simplify" command

• bio/util/length-stats_test.go
  • Line 1: warning: file is not gofmted with -s (gofmt)

• bio/seqio/fastx/doc.go
  • Line 1: warning: file is not gofmted with -s (gofmt)

go_vet100%

go vet examines Go source code and reports suspicious constructs, such as Printf calls whose arguments do not align with the format string.

No problems detected. Good job!

gocyclo70%

Gocyclo calculates cyclomatic complexities of functions in Go source code. The cyclomatic complexity of a function is calculated according to the following rules: 1 is the base complexity of a function +1 for each 'if', 'for', 'case', '&&' or '||' Go Report Card warns on functions with cyclomatic complexity > 15.

• bio/seq/ambiguous_bases.go
  • Line 28: warning: cyclomatic complexity 18 of function base2code() is high (> 15) (gocyclo)

• bio/seqio/fastx/reader.go
  • Line 195: warning: cyclomatic complexity 31 of function (*Reader).read() is high (> 15) (gocyclo)
  • Line 338: warning: cyclomatic complexity 20 of function (*Reader).parseRecord() is high (> 15) (gocyclo)

• bio/featio/gtf/gtf.go
  • Line 45: warning: cyclomatic complexity 33 of function ReadFilteredFeatures() is high (> 15) (gocyclo)

• bio/seqio/fai/fai.go
  • Line 110: warning: cyclomatic complexity 26 of function Create() is high (> 15) (gocyclo)

• bio/seq/codon_tables.go
  • Line 317: warning: cyclomatic complexity 37 of function codonTableFromText() is high (> 15) (gocyclo)
  • Line 205: warning: cyclomatic complexity 28 of function (*CodonTable).Translate() is high (> 15) (gocyclo)
  • Line 47: warning: cyclomatic complexity 24 of function (CodonTable).string() is high (> 15) (gocyclo)

• bio/seq/alphabet.go
  • Line 243: warning: cyclomatic complexity 20 of function (*Alphabet).IsValid() is high (> 15) (gocyclo)

• bio/seq/seq_test.go
  • Line 49: warning: cyclomatic complexity 20 of function TestSubSeq() is high (> 15) (gocyclo)
  • Line 85: warning: cyclomatic complexity 19 of function TestSubSeqInplace() is high (> 15) (gocyclo)

golint91%

Golint is a linter for Go source code.

• bio/seq/codon_tables.go
  • Line 1: warning: package comment should be of the form "Package seq ..." (golint)

• bio/seq/seq.go
  • Line 18: warning: exported var QUAL_MAP should have comment or be unexported (golint)
  • Line 663: warning: don't use underscores in Go names; method parameter transl_table should be translTable (golint)

license100%

Checks whether your project has a LICENSE file.

No problems detected. Good job!

ineffassign95%

IneffAssign detects ineffectual assignments in Go code.

• bio/seqio/fai/fai.go
  • Line 184: warning: ineffectual assignment to seqLen (ineffassign)

misspell95%

Misspell Finds commonly misspelled English words

• bio/seq/qual.go
  • Line 136: warning: "unkown" is a misspelling of "unknown" (misspell)